Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015858799.1_cds_XP_016514088.1_26571
CDS Infomation

[gene=LOC107830918] [db_xref=GeneID:107830918] [protein=lycopene epsilon cyclase, chloroplastic-like] [protein_id=XP_016514088.1] [location=complement(join(18887..19052,19675..19807,19897..20022,20104..20200,20476..20583,20656..20799,21127..21229,21320..21430,21520..21655,21775..21949,22967..23242))] [gbkey=CDS]
Sequence

ATGGAGTGTATTGGAGCTCGAAATTTTTCTACAATGGCGGTTTTTACGTGTCCGAGATTC
AAATCATTAGGAAGAAAGAGAATTATGCCAAGAAAAAAGCAACCATTTTGGCCTATACAT
ATGAAAGTGAAGTGTAGTGGAAGTGATAGTTGTGTAGTGGTTAAAGAAGATTTTGCTGAT
GAAGAAGATTATATAAAAGCTGGTGGTTCAGAACTTGTTTTTGTTCAAATGCAGCAGAAT
AAAGACATGGATCTACAGTCTAAGCTTTCTGATAAGTTGCGACAAATATCATCAGCTGGA
CAAACTATACTGGATTTAGTGGTCATTGGCTGTGGTCCTGCTGGTCTTGCTCTTGCTGCG
GAGTCTGCTAAACTCGGGTTGAACGTGGGGCTCGTTGGTCCTGATCTTCCTTTCACAAAT
AACTATGGTGTCTGGGAAGACGAGTTCAAAGATCTTGGGCTTCAAGCATGCATTGAACAT
GTTTGGAGTGATACCATTGTATATCTTGATGATGCCGATCCAATTCTTATTGGACGTGCT
TATGGAAGAGTTAGTCGCCATTTACTGCATGAGGAGTTACTCAAAAGGTGTGTGGAGGCA
GGTGTTTTATATCTTAACTCGAAAGTGGATAGGATCGTTGAGTCCACAAGTGGCCACAGT
CTTGTAGAGTGCGAGGGCGACATTGTCATTCCTTGCAGGTTTGTCACTGTTGCATCTGGA
GCCGCCTCAGGGAAATTCTTGCAGTATGAGTTGGGAGGTCCTCGGGTTTCTGTTCAAACA
GCTTATGGAGTGGAAGTTGAGGTCGATAACAATCCGTATGATCCAAGCCTGATGGTTTTC
ATGGATTATAGAGACTATGTCAGACACGACGCTCAATCTTTAGAAGCTAAATATCCAACA
TTTCTTTATGCCATGCCCATGACTAAAACAAGAGTCTTTTTCGAGGAAACTTGTTTGGCT
TCAAAAGATGCAATGCCATTTGATCTATTAAAGAAAAAACTGATGTTACGATTGAACACA
TTGGGCATAAAAATTAAAAAAATCTACGAGGAGGAATGGTCTTACATACCAGTTGGTGGA
TCGTTGCCAAATACAGAGCAGAAAACACTTGCGTTTGGCGCTGCTGCTAGCATGGTTCAT
CCAGCTACAGGTTATTCAGTTGTCAGATCACTGTCCGAGGCGCCAAAATGCGCCTCCGTA
CTTGCAAATATTTTAAGACAAAATCATGTCAAGAACATGATTACCAGTTCAAGTGCCACA
AGTATCTCAACTCAAGCTTGGAACACCCTTTGGCCACAAGAACGAAAAAGGCAACGATCG
TTTTTCCTATTTGGATTGGCACTCATATTGCAGCTGGATATTGAGGGGATTAGGTCATTT
TTCCGCGCATTCTTCCGTGTACCAAAATGGATGTGGCAAGGTTTTCTTGGCTCTAGTCTT
TCATCAGCAGACCTCATGTTATTTGCCTTCTACATGTTTATTATTGCACCAAATGACATG
AGAAAAGGCCTAATCAGACATCTGTTATCTGATCCAACTGGTGCAACTATGATAAGAACT
TATCTTACATTTTAG

Peptide Sequence

PEP ID

XP_016514088.1
PEP Infomation

PREDICTED: lycopene epsilon cyclase, chloroplastic-like [Nicotiana tabacum]
Sequence

MECIGARNFSTMAVFTCPRFKSLGRKRIMPRKKQPFWPIHMKVKCSGSDSCVVVKEDFAD
EEDYIKAGGSELVFVQMQQNKDMDLQSKLSDKLRQISSAGQTILDLVVIGCGPAGLALAA
ESAKLGLNVGLVGPDLPFTNNYGVWEDEFKDLGLQACIEHVWSDTIVYLDDADPILIGRA
YGRVSRHLLHEELLKRCVEAGVLYLNSKVDRIVESTSGHSLVECEGDIVIPCRFVTVASG
AASGKFLQYELGGPRVSVQTAYGVEVEVDNNPYDPSLMVFMDYRDYVRHDAQSLEAKYPT
FLYAMPMTKTRVFFEETCLASKDAMPFDLLKKKLMLRLNTLGIKIKKIYEEEWSYIPVGG
SLPNTEQKTLAFGAAASMVHPATGYSVVRSLSEAPKCASVLANILRQNHVKNMITSSSAT
SISTQAWNTLWPQERKRQRSFFLFGLALILQLDIEGIRSFFRAFFRVPKWMWQGFLGSSL
SSADLMLFAFYMFIIAPNDMRKGLIRHLLSDPTGATMIRTYLTF

Transcript Sequence

Gene sequence data has not been registered.